PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079963.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 338aa MW: 36661.9 Da PI: 7.9172

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	23	49	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ XP_028079963.1 23 PGEPDCPYFVKTQRCKFGLRCKFNHPK 49 5789*********************96 PP
2	zf-CCCH	39.4	1e-12	72	96	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_028079963.1 72 EPPCAFYMKTGKCKFGATCKFHHPK 96 79*********************96 PP
3	zf-CCCH	39	1.4e-12	149	172	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_028079963.1 149 EVDCPFYLKTGSCKYGATCRYNHP 172 689********************9 PP
4	zf-CCCH	41.5	2.3e-13	233	256	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG Ck+G+rCkF+H+ XP_028079963.1 233 QIECDFYMKTGVCKFGERCKFHHP 256 568********************8 PP
5	zf-CCCH	39.2	1.2e-12	289	310	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_028079963.1 289 CPYYMKTGTCKYGATCRFDHPP 310 ********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MGPSSALLIV PLTATSESLP ERPGEPDCPY FVKTQRCKFG LRCKFNHPKD KAVALDARES 60 AGFSDLPDRP SEPPCAFYMK TGKCKFGATC KFHHPKDIDL TAAGQDNGND GQIEVVISND 120 GTVEVNPMKP PFTPALFHNS KGLPMRLGEV DCPFYLKTGS CKYGATCRYN HPDRYAINPP 180 AAAIGPAIIA SPAAHLNIGV VNPAASILQT IDPRLTQTTF GLAPTIFPQR PGQIECDFYM 240 KTGVCKFGER CKFHHPIDRS ALTLSKEAQE QNVKLSLAGL PRREGSVHCP YYMKTGTCKY 300 GATCRFDHPP PGEVMALATS QETSTSVGGE VTAQELQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-134	C3H family protein