PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080802.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 211aa MW: 24006 Da PI: 9.2543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.2	5.3e-33	3	94	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++Cvlap fp +++++f++vhk+FG+sn +k++k+l+ee+r++a++slv+eA +r++dP+ G +g ++k+ ++l+ k+ XP_028080802.1 3 ACASCKHQRKKCTDKCVLAPFFPVNKSREFQAVHKVFGVSNATKIVKNLKEEDRKKAIDSLVWEAFCRLKDPILGPYGEYRKVYEELKLYKS 94 7**********************************************************************************999988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MPACASCKHQ RKKCTDKCVL APFFPVNKSR EFQAVHKVFG VSNATKIVKN LKEEDRKKAI 60 DSLVWEAFCR LKDPILGPYG EYRKVYEELK LYKSSQYQQI LQVPEEGGGM VYEPTSLVGW 120 NNTNTNTNNN AIIHKGTSMV GVANYNNNNT NYIHHNNGNS ISNSSPYTYS LNHHNIHGME 180 RIRQERHVGS AVDVVLPQQN SVNSLNQQYY L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-45	LBD family protein