PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028081001.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 273aa    MW: 31831.2 Da    PI: 5.5912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028081001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +++++G  +W+  +++ g+ R++k+c++rw +yl
   XP_028081001.1 14 KGAWSPEEDNKLRAYIHRYGHWNWRELPKYAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding54.92.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ Ed+l+ +++++lG++ W++Ia++++ gRt++++k++w+++l
   XP_028081001.1  67 RGKYTKAEDDLIMELHEKLGNK-WSAIAAKFP-GRTDNEIKNHWHTHL 112
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MVRTPSFDKN GTKKGAWSPE EDNKLRAYIH RYGHWNWREL PKYAGLSRCG KSCRLRWMNY  60
LRPNVKRGKY TKAEDDLIME LHEKLGNKWS AIAAKFPGRT DNEIKNHWHT HLKKRINENH  120
STFELKQKAI QISQSLANLE LQSHDSPRSE INHVTDELGS KDVTDEIYQQ ILESSPLSSQ  180
ELSSSDFSSS MTPDYALLSD KNWVGEDSMS SSESFEESVR NFWIELAFED FSYQQNEFSS  240
NLAEGESTFP CFLDHDDDSI EWFHQILKEL PEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-57MYB family protein