PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028081750.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 356aa MW: 40245.4 Da PI: 5.4051

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028081750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed +l+ ++ +G +W++ ++ g+ R++k+c++rw +yl XP_028081750.1 16 KGPWSPAEDFRLLTFIHNHGHTNWRSLPKLAGLLRCGKSCRLRWINYL 63 79****************************99**********97 PP
2	Myb_DNA-binding	55.4	1.4e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_028081750.1 69 RGNFTKEEEETIIKLHQSLGNK-WSKIASYLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRGRAPCCD KSKVKKGPWS PAEDFRLLTF IHNHGHTNWR SLPKLAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTKEEEETI IKLHQSLGNK WSKIASYLPG RTDNEIKNVW NTHLKKRLIK 120 KDADDDHKNS RGSCSSPSSS SSYSSSSSSS NLRPHTHYES HQVCNMEKEV LLSAKNQDIS 180 SITTSSSASD CAGPKEAIST SSSSNCSHQV DKAAVVVYDE VNKQKMSLNS DDHQQEVIEI 240 PMEESDIDFW DMLDNLESNE SQPQEFEFEA SHNSQDSNLF GEDLDDHDHD PNRGIGIEWL 300 RYLENELGLE DDDQCNNIIA AKYNDEVGQL GSSTTSLADH HQVMLMRPEI DQFFGI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRGRAPCCD KSKVKKGPWS PAEDFRLLTF IHNHGHTNWR SLPKLAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTKEEEETI IKLHQSLGNK WSKIASYLPG RTDNEIKNVW NTHLKKRLIK  120
KDADDDHKNS RGSCSSPSSS SSYSSSSSSS NLRPHTHYES HQVCNMEKEV LLSAKNQDIS  180
SITTSSSASD CAGPKEAIST SSSSNCSHQV DKAAVVVYDE VNKQKMSLNS DDHQQEVIEI  240
PMEESDIDFW DMLDNLESNE SQPQEFEFEA SHNSQDSNLF GEDLDDHDHD PNRGIGIEWL  300
RYLENELGLE DDDQCNNIIA AKYNDEVGQL GSSTTSLADH HQVMLMRPEI DQFFGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	1e-73	MYB family protein