PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028081876.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 616aa MW: 68150.7 Da PI: 6.69

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028081876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	445	491	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_028081876.1 445 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 491 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MKVELGMGAL VWSEEDKAMV AAVLGSRAFD YLMSSSVSAE CSLMVVGSDE NLQNFLSDLV 60 DRPNTANFSW NYAFFWQISR SKDGDLVLGW GDGSCREPKE GEESEVTQIL NFRLEDETQQ 120 RMRKRVLQKL HTLFGGSDED SYAFGLDRVT DIEMFFLASM YFSFPRGEGG PGKCFASGKH 180 IWLSDAMKTS SDYCFRSFLA KSAGIQTIVL IPTKIGVVEF GSVRSIPESL ELVQSIKSSF 240 SAFSSPIRAK PMAVIPVMSQ KKDGNAHFTN LGVGDRSNGV VPKIFGQDLN SGHSQFREKL 300 AVRKTEERPW EAFSNGNLIP FPNARNGLHG SGWTQFRSVN QGATVETYSP QAATNNLQEL 360 VNGVSGVRDE FRLNQYQPQK TAPMQIDFTG GATSRPSIIS RPVSIESEHS DVEASGKDER 420 AGPVDEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL 480 GDAIAYITEL QRKLKDMESE REKLGSTSID QSSPALEANP NSENQNQVPG IEIKAAHDEV 540 VVRVSCPLDT HPVSRVIQAF KDAQITVVES KLATGNDTVF HTFVIKSQGS EQLTKERLVA 600 AFSRESNSLQ PLSSVG

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MKVELGMGAL VWSEEDKAMV AAVLGSRAFD YLMSSSVSAE CSLMVVGSDE NLQNFLSDLV  60
DRPNTANFSW NYAFFWQISR SKDGDLVLGW GDGSCREPKE GEESEVTQIL NFRLEDETQQ  120
RMRKRVLQKL HTLFGGSDED SYAFGLDRVT DIEMFFLASM YFSFPRGEGG PGKCFASGKH  180
IWLSDAMKTS SDYCFRSFLA KSAGIQTIVL IPTKIGVVEF GSVRSIPESL ELVQSIKSSF  240
SAFSSPIRAK PMAVIPVMSQ KKDGNAHFTN LGVGDRSNGV VPKIFGQDLN SGHSQFREKL  300
AVRKTEERPW EAFSNGNLIP FPNARNGLHG SGWTQFRSVN QGATVETYSP QAATNNLQEL  360
VNGVSGVRDE FRLNQYQPQK TAPMQIDFTG GATSRPSIIS RPVSIESEHS DVEASGKDER  420
AGPVDEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL  480
GDAIAYITEL QRKLKDMESE REKLGSTSID QSSPALEANP NSENQNQVPG IEIKAAHDEV  540
VVRVSCPLDT HPVSRVIQAF KDAQITVVES KLATGNDTVF HTFVIKSQGS EQLTKERLVA  600
AFSRESNSLQ PLSSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	435	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein