PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028082069.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 581aa MW: 64224.6 Da PI: 8.1856

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028082069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.5e-18	58	101	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++v+++ g++Wk+Ia++++ gRt+ qc +rwqk+l XP_028082069.1 58 WTEEEDNLLSEVVRKFNGKNWKKIAECIP-GRTDVQCLHRWQKVL 101 ***************************.**********986 PP
2	Myb_DNA-binding	52.4	1.2e-16	107	153	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ ++ +v+++G + W++Ia+ ++ gR +kqc++rw+++l XP_028082069.1 107 KGPWTKAEDDCIIGLVEKYGCKKWSAIAKFLP-GRIGKQCRERWHNHL 153 79****************************.***********97 PP
3	Myb_DNA-binding	45.3	2e-14	159	201	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l+ +++ +G++ W+ ar ++ gRt++ +k++w+ XP_028082069.1 159 KEAWTKEEEVVLAYYHRIYGNK-WAELARFLP-GRTDNAIKNHWN 201 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MVEVKEEEEY IVGLTKEVQF ASCSPVSDSS CCDNLTPRSP SVQGMITCPM KRSSQAGWTE 60 EEDNLLSEVV RKFNGKNWKK IAECIPGRTD VQCLHRWQKV LNPELVKGPW TKAEDDCIIG 120 LVEKYGCKKW SAIAKFLPGR IGKQCRERWH NHLDPAIKKE AWTKEEEVVL AYYHRIYGNK 180 WAELARFLPG RTDNAIKNHW NCSVKKKLDL NLLPSSVQTA PPEFYSRGTK SVCTEVTVAT 240 HGVSETGSPD PRRGKKHVSE TCSTELVLGN ANVGDRCLEL NPSRIGTCRS SEAGVNKLLN 300 PLRRIQSNGT DAVASGLTSE PCHGNGYHDT HGPLKASSLD DFFLASGSTK SSFTPLNVVL 360 PVAPERMFES PKRHKGCGLG IMNSESGGLS SNSFLSLSTF GFREHKGEFG KKNIVHVTPH 420 PEDKYNGFLC NKPPHLKDSV IPKETGAGCA SVDPLDLALS ISVSGSSPES SLRKSVMSYK 480 NTPSIIRKQT SREADSRHSS DCNYTSAQNS CTHEGDFTNV KQGVHSLFHR SQTSVVDRSL 540 EKRLEYEFDK EWDSATVRCF TPVSATATSL LYFGANMMLT P

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MVEVKEEEEY IVGLTKEVQF ASCSPVSDSS CCDNLTPRSP SVQGMITCPM KRSSQAGWTE  60
EEDNLLSEVV RKFNGKNWKK IAECIPGRTD VQCLHRWQKV LNPELVKGPW TKAEDDCIIG  120
LVEKYGCKKW SAIAKFLPGR IGKQCRERWH NHLDPAIKKE AWTKEEEVVL AYYHRIYGNK  180
WAELARFLPG RTDNAIKNHW NCSVKKKLDL NLLPSSVQTA PPEFYSRGTK SVCTEVTVAT  240
HGVSETGSPD PRRGKKHVSE TCSTELVLGN ANVGDRCLEL NPSRIGTCRS SEAGVNKLLN  300
PLRRIQSNGT DAVASGLTSE PCHGNGYHDT HGPLKASSLD DFFLASGSTK SSFTPLNVVL  360
PVAPERMFES PKRHKGCGLG IMNSESGGLS SNSFLSLSTF GFREHKGEFG KKNIVHVTPH  420
PEDKYNGFLC NKPPHLKDSV IPKETGAGCA SVDPLDLALS ISVSGSSPES SLRKSVMSYK  480
NTPSIIRKQT SREADSRHSS DCNYTSAQNS CTHEGDFTNV KQGVHSLFHR SQTSVVDRSL  540
EKRLEYEFDK EWDSATVRCF TPVSATATSL LYFGANMMLT P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	5e-82	MYB family protein