PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028082579.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27748.4 Da    PI: 10.1779
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028082579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.71.7e-191052244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    +i ++s r+ t+ kR++g++KKA+ELS+LC+++++vii s++ 
  XP_028082579.1 10 FITSDSERKATLKKRKKGLMKKASELSTLCGIDACVIIHSPNE 52
                    799*************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MPRKKMKLAF ITSDSERKAT LKKRKKGLMK KASELSTLCG IDACVIIHSP NESQPEVWPN  60
NLGVQRVLAK FKRIPEMEQS KKMMTQESFI RQRIAKANEQ LKKQLKNNRE KEMTEVMYQC  120
LSGRGLQNLS MVDQYDLNWL IDQNLKEIGK KIESLKKTPQ RVAPVALMNT KEMLGNGMHR  180
EEEKLLGVDL AMDAMKRSHG FNEWMNNPLY ENMGFDWDKM MVPFGDNHNL MWSSFFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKMKLAFITSDSERKATLKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-51M-type_MADS family protein