PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028082580.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 217aa    MW: 25218.5 Da    PI: 10.1582
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028082580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.6e-161050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf +R++g++KK +ELS+LC+++++ ii s+
  XP_028082580.1 10 FITNDSARKATFNRRKKGMMKKVSELSTLCGIDACAIIQSP 50
                    89************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MPRKKVKLAF ITNDSARKAT FNRRKKGMMK KVSELSTLCG IDACAIIQSP YESQPEVWPN  60
NLGVQRVLAK FGRMLEMEQL NKIMTQESFI RQRIAKANEQ LKKKLKDNRE KEMTEVMYQC  120
LSGRGLQNLS MVDQCDLNWL IDKNLKEIGR KIELLKKTPQ QEKLLGVDLA MDAMKRSLGF  180
NEWMNNPHYE NMGFDGDKMM VPFGGNHNLM WSSFFFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-57M-type_MADS family protein