PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028083366.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 1050aa    MW: 117244 Da    PI: 6.5845
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028083366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.42.1e-26134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k ltpsd +++g +++pk++a+e+     +++++ +++l+ +d++g +W++++iyr++++r++l++GW+ Fv+a++L +gD ++F   + +++
  XP_028083366.1 134 FRKRLTPSDQSTHGGFSVPKRYADECfppldMSQEPPTQELVAKDLHGSEWRFRHIYRGHPKRHLLSSGWSTFVSAKKLVVGDACIFL--RGENG 226
                     8899***************************555566679************************************************..44999 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+v+v+r+
  XP_028083366.1 227 ELYVGVRRA 235
                     9******97 PP
2Auxin_resp981.4e-32260345183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+st+++F+v+Y+P++s++eF++++++++k+ ++ +s+G+Rf m+f++e+++e ++   +Gtvvg++++d +rWp+S+Wr+Lk
  XP_028083366.1 260 AFHAVSTGTMFTVYYRPWTSPAEFIIPYDRYMKSAENDYSIGTRFSMQFDGEECPEPKCsifAGTVVGINNIDCIRWPGSEWRCLK 345
                     689*****************************************************9988889*********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    
MDSSSGNERF SHKVVEVETE NNRCNQGQKD DLHAQLWHAC AGPLVNVPRA GDKVFYFPQG  60
HIEQVEAYSN QDGKVEMPIY DLPSKILCKV VYVQLKAEPY TDEVFAQITL LPEGPSPEHR  120
TSQCQHQKIN ACSFRKRLTP SDQSTHGGFS VPKRYADECF PPLDMSQEPP TQELVAKDLH  180
GSEWRFRHIY RGHPKRHLLS SGWSTFVSAK KLVVGDACIF LRGENGELYV GVRRATKSQI  240
SIPASVISGV SMQHGILASA FHAVSTGTMF TVYYRPWTSP AEFIIPYDRY MKSAENDYSI  300
GTRFSMQFDG EECPEPKCSI FAGTVVGINN IDCIRWPGSE WRCLKVQWDA PSKKIVRPQR  360
ISHWNIEPEE VKKKCSSILT DRKRERPLDP STPGFTVLVS EGLSKGSVEH PPKRQLEVLQ  420
GQENRAIDAH EFGALRQPLL SHLIPQPNPD WGHPQIGLEN QPHFLIGDAH EFGALRQPLL  480
SHLIPQPNPD WGHPQIGLEN QPHFLIGDAH EFGALRQPLL SHLIPQLNPD CGHPQIGLEN  540
QPHFLIGDAH EFGALRQPLL SHLIPQLNPD CGHPQIGLEN QPHFLIGDAH EFGALRQPLL  600
SHLIPQLNPD CGHPQIGLEN QPHFLIGDAH EFGALRQPLL SHLIPQLNPD CGHPQIGLEN  660
QPHFLIGDAH EFGALRQPLL SHLIPQLNPD CGHPQIGLEN QPHFLIGDAH EFGALRQPLL  720
SHLIPQLNPD CGHPQIGLEN QPHFLIGDAH EFGALRQPLL SHLIPQLNPD CGHPQIGLEN  780
QPHFLIGESA DYWSPTFTSS GAHDSVEVSR SLSFPKFNST SSVSVDCKAP EEYKIKAPLS  840
QPNGNAKCML FGVNIFSSPL ELPSQQVVSC SDLHSVCPAL PVVSHSSISE TDQVSETSKS  900
VYGNLSEKQC KNCCSITGRS CTKVLKYGTV LGRSVHLARF DDYDELIREL DQMFDFKGSL  960
IDGSNGWHVT YTDGKGNMML IGDYPWLNSG SWCRRCSFVQ RKMLISWIQL HQTQHHYNSY  1020
LLGLLPSLCL IPKEVCIHSR TSNTAYSESM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-153ARF family protein