PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028083497.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 351aa MW: 39829.7 Da PI: 5.1136

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028083497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_028083497.1 14 KGPWSPEEDEKLKAYIEKYGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.7	4.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_028083497.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDEKLKAYIE KYGTGNNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDVKNYWN TRLKKKLLGR 120 RKQSNVNRLS STSHDPKDEN GSLDDSCEPV LSNSALERLQ LHMQLQSCQN PLSFYNNPAL 180 WPKLQPLQEK LIQSLQFLNE NTNYTLMQQH VLPSTQPGQE YKIDFYEPPN TSVIDGLNID 240 ELENSLNAFN AGSNQVVMEQ SNNEGIQAVS IFQADLDDLL HNKTIGLPPQ EEDPIAEFDC 300 FKAMDSSKDS MMWWSNDFEL KSASTNSWDS SSPVLQSHGM CQDYGLGYNL Q

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDEKLKAYIE KYGTGNNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDVKNYWN TRLKKKLLGR  120
RKQSNVNRLS STSHDPKDEN GSLDDSCEPV LSNSALERLQ LHMQLQSCQN PLSFYNNPAL  180
WPKLQPLQEK LIQSLQFLNE NTNYTLMQQH VLPSTQPGQE YKIDFYEPPN TSVIDGLNID  240
ELENSLNAFN AGSNQVVMEQ SNNEGIQAVS IFQADLDDLL HNKTIGLPPQ EEDPIAEFDC  300
FKAMDSSKDS MMWWSNDFEL KSASTNSWDS SSPVLQSHGM CQDYGLGYNL Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-94	MYB family protein