PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028083698.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24916.5 Da    PI: 10.3066
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028083698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.2e-191663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie k + qvtfsk r g++K A+EL++LC +e a+i+fs+tgk++ +
  XP_028083698.1 16 KIEIKNRLQVTFSKHRSGLFKMASELCTLCTVEMAIIVFSPTGKVFSF 63
                    68889999*************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MAKKPSMGHQ KIKIAKIEIK NRLQVTFSKH RSGLFKMASE LCTLCTVEMA IIVFSPTGKV  60
FSFGHPNVDS IVDQFLTRNP PPNTTTRRLI EAHRNASMRE LNLQLTQVLN ELEVKKRHGE  120
TFDHTRKASQ RQYWWEAPID KLGLHELEQL RNSMIELKKN VTNQANKIQV EGNTNPLPFF  180
LVNGSGIVDP FESKTSHINA SSSTSPNVHN FGYYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-45M-type_MADS family protein