PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028084468.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 438aa MW: 48264.9 Da PI: 8.5163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028084468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.4e-16	234	280	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L +++ Y+k+Lq XP_028084468.1 234 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIAYLKQLQ 280 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MKGIMNQCIV HNWNPRHQRQ EQVEGEEEKT SSHVHSHLHN LTTPHIVPMS NFEVTELTWE 60 NGQLAMHGLG GLLPTAPTKP TWGRTGDTLE SIVHLAACHQ QNLNLLPPHD HLHHHNPAPN 120 RTTSSAKKCA ETVGHMPMSP GFSKKRMWSE SEKKFASGIQ DDRSACASAT IFKDSGTTMM 180 TWASFESPPQ SLKTKTTDED SACNGESENQ DEEREMKGET GRSHSTRRCR AAAVHNQSER 240 RRRDRINQKM KALQKLVPNA SKTDKASMLD EVIAYLKQLQ AQVQMMSSAR NMPQQMMMPL 300 GMQQHIHMSL LARMGLGVGL GLGMGPMGML DMSTVARPQS LSPLLHPGTV AAAVTAGPTF 360 VPPPFVLPPM MPSHTQAQAT SDAAINNSVP FNNPYCAFLA QSMNMDLYNK MAAIYHQQVN 420 QTTQPTSKPL PSSHVQGG

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MKGIMNQCIV HNWNPRHQRQ EQVEGEEEKT SSHVHSHLHN LTTPHIVPMS NFEVTELTWE  60
NGQLAMHGLG GLLPTAPTKP TWGRTGDTLE SIVHLAACHQ QNLNLLPPHD HLHHHNPAPN  120
RTTSSAKKCA ETVGHMPMSP GFSKKRMWSE SEKKFASGIQ DDRSACASAT IFKDSGTTMM  180
TWASFESPPQ SLKTKTTDED SACNGESENQ DEEREMKGET GRSHSTRRCR AAAVHNQSER  240
RRRDRINQKM KALQKLVPNA SKTDKASMLD EVIAYLKQLQ AQVQMMSSAR NMPQQMMMPL  300
GMQQHIHMSL LARMGLGVGL GLGMGPMGML DMSTVARPQS LSPLLHPGTV AAAVTAGPTF  360
VPPPFVLPPM MPSHTQAQAT SDAAINNSVP FNNPYCAFLA QSMNMDLYNK MAAIYHQQVN  420
QTTQPTSKPL PSSHVQGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	244	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-43	bHLH family protein