PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028084905.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 167aa    MW: 18896.3 Da    PI: 9.8934
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028084905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1718.2e-53714024170
           YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118
                     vsvPs+ lf +vtvrCGhC++llsvn+a a q l+ ++    +  ++    +  ++ +l s   +++++++ +    +  n+++e      v+r 
  XP_028084905.1   7 VSVPSSNLFDIVTVRCGHCSNLLSVNMAAAFQSLSWQDI---Q-APN-YTSQDYRNIDLGS---SSKCNNKMTMRPPI-ANTTQER----AVNRT 88 
                     9****************************9999999984...1.111.1111122222222...22222222222222.3333333....479** PP

           YABBY 119 PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_028084905.1  89 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 140
                     **************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MSNPTWVSVP SSNLFDIVTV RCGHCSNLLS VNMAAAFQSL SWQDIQAPNY TSQDYRNIDL  60
GSSSKCNNKM TMRPPIANTT QERAVNRTPE KRQRVPSAYN QFIKEEIQRI KANNPDISHR  120
EAFSTAAKNW AHFPHIHFGL MLETNNQPKL DEGSGKHLMP RASLLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.13e-70YABBY family protein