PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085274.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-other

Protein Properties

Length: 1032aa MW: 114955 Da PI: 8.9531

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.4e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R + +k XP_028085274.1 69 KRPRDLLNPKAVKYMQAVFSIKDAITKKESREISALFGVTVTQVRDFFTSQRSRVRK 125 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence
MEVLKENQLE LAVCGSTPSF QGLLDSQQEL FHSQIDQLQN IVFIQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISALFGVTVT QVRDFFTSQR 120 SRVRKFVRLS TEKALRSNAS KEVQDGVPMT TDPAMPVYPV PLNSVGPPSS EEGPSCSTQD 180 ETLPVLDDPD RNFVDNILSL MRKEEMFSGQ VKLMEWILQI QNSSVLHWFL TKGGVMILAT 240 WLSQAASEEQ TSVLHVILEV LCHLPLHKAL PVHMSAILQS VNRLRFYRAS DISIRARNLL 300 SRWSKIFARS QAMKKSNAVK SSTDAQNEML LKQSISDIMD DESWESKIDA SEDTLAPSLE 360 GSENFRKLES PQLLKLLPAS ADDSSKKLIR GVSSSQTRER RKVLMVEQPG QKQPGRSFQV 420 ARSVPATQGR PLSADDIQKA KLRAQFMQSK YGKSGVSSGE GHQVKTEGPS KFPSSQARTL 480 LSASKARVQP RVEECKDPVM LLSKVSIQQE APLGNKVNSD LNEPLSKKFK RVQVQIPWQT 540 PADFSFSTLF FLNAEMRIHD DWRVGMGENS KEVEVQRNRI RREKETIYRT SLEIPHNPKE 600 PWDSEMEYDD TLTPEIPTEQ LPDPDGAETV VSPQENEIST VVAEVPESST SQISNGSVPE 660 PDLELLAVLL KNPELVFALT SGQGGSLSSE QTVKLLDMIK SNGVASLANL TTGLGRNAPE 720 ENVQVSLPSP TPSSDPVTSG WSKNPFSRQS ITANREPVAV SIPSQEKFPA SNLVRHELSP 780 PIKNIMAQQP PPPPSFPPLS HQALPQYPLP HNNNRLTPPV IPPVHQIATS SSETVRNLKN 840 IPPSSSSLPS SMRVETSTYV KTAPVSDMVN RNPVSHPSTS MLPPRAQPQR QREPRPAFVP 900 EPMVSTMHSW REINPGLASN PHPLPNQNNY NSFVRGAGPM HHGPPRDRDE YMGEEDVGFE 960 SWSPERSPFR SNEYMSGLTY REPRMNMGHN HRSRPGPGPG PGPDRSRPWN SSSEYRDYNR 1020 QGNRRPWRDG RR

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence

MEVLKENQLE LAVCGSTPSF QGLLDSQQEL FHSQIDQLQN IVFIQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISALFGVTVT QVRDFFTSQR  120
SRVRKFVRLS TEKALRSNAS KEVQDGVPMT TDPAMPVYPV PLNSVGPPSS EEGPSCSTQD  180
ETLPVLDDPD RNFVDNILSL MRKEEMFSGQ VKLMEWILQI QNSSVLHWFL TKGGVMILAT  240
WLSQAASEEQ TSVLHVILEV LCHLPLHKAL PVHMSAILQS VNRLRFYRAS DISIRARNLL  300
SRWSKIFARS QAMKKSNAVK SSTDAQNEML LKQSISDIMD DESWESKIDA SEDTLAPSLE  360
GSENFRKLES PQLLKLLPAS ADDSSKKLIR GVSSSQTRER RKVLMVEQPG QKQPGRSFQV  420
ARSVPATQGR PLSADDIQKA KLRAQFMQSK YGKSGVSSGE GHQVKTEGPS KFPSSQARTL  480
LSASKARVQP RVEECKDPVM LLSKVSIQQE APLGNKVNSD LNEPLSKKFK RVQVQIPWQT  540
PADFSFSTLF FLNAEMRIHD DWRVGMGENS KEVEVQRNRI RREKETIYRT SLEIPHNPKE  600
PWDSEMEYDD TLTPEIPTEQ LPDPDGAETV VSPQENEIST VVAEVPESST SQISNGSVPE  660
PDLELLAVLL KNPELVFALT SGQGGSLSSE QTVKLLDMIK SNGVASLANL TTGLGRNAPE  720
ENVQVSLPSP TPSSDPVTSG WSKNPFSRQS ITANREPVAV SIPSQEKFPA SNLVRHELSP  780
PIKNIMAQQP PPPPSFPPLS HQALPQYPLP HNNNRLTPPV IPPVHQIATS SSETVRNLKN  840
IPPSSSSLPS SMRVETSTYV KTAPVSDMVN RNPVSHPSTS MLPPRAQPQR QREPRPAFVP  900
EPMVSTMHSW REINPGLASN PHPLPNQNNY NSFVRGAGPM HHGPPRDRDE YMGEEDVGFE  960
SWSPERSPFR SNEYMSGLTY REPRMNMGHN HRSRPGPGPG PGPDRSRPWN SSSEYRDYNR  1020
QGNRRPWRDG RR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	3e-32	HB-other family protein