PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085468.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 220aa    MW: 25076.7 Da    PI: 7.5713
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY167.78.2e-522917323169
           YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvir 117
                      vsvP +sl++vvtvrCGhCtsllsvn++kas +       + +  +e +ee   +e +++ +v  ++s+s  +ss   +e+e++ v   + v++
  XP_028085468.1  29 QVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPLHLFANSLNQDNEPKEEIIPQEAETQ-KVLDKRSPSLVISSDD-DEEEEDAVLVNHVVNK 121
                     59**************************999854322222112222223333333333333.3344445555555544.44444455555669** PP

           YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                     PPekrqr+Psayn fikeei+r+ka+ P+++h+eafsaaaknWahfP+i ++
  XP_028085468.1 122 PPEKRQRAPSAYNNFIKEEIRRLKAKYPNMTHKEAFSAAAKNWAHFPPIQYK 173
                     *************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MHSMICLLSS LSFIFYLFLF DIIFIFKTQV SVPCSSLSMV VTVRCGHCTS LLSVNMMKAS  60
FVPLHLFANS LNQDNEPKEE IIPQEAETQK VLDKRSPSLV ISSDDDEEEE DAVLVNHVVN  120
KPPEKRQRAP SAYNNFIKEE IRRLKAKYPN MTHKEAFSAA AKNWAHFPPI QYKRDGESCG  180
QGAERKMPRT SDVGEVHVEG NGFRERKASR HSIWTKTPFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.14e-64YABBY family protein