PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028085469.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

YABBY

Protein Properties

Length: 219aa MW: 24765.1 Da PI: 6.9289

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028085469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	210.9	4.5e-65	7	172	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++f+ eq+CyvqC++C+til+vsvP +sl++vvtvrCGhCtsllsvn++kas + + + +e +ee +e +++ +v ++s+s + XP_028085469.1 7 HLFDLQEQICYVQCGYCTTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPLHLFANSLNQDNEPKEEIIPQEAETQ-KVLDKRSPSLVI 100 78999******************************************999854322222112222223333333333333.334444555555 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ss +e+e++ v + v++PPekrqr+Psayn fikeei+r+ka+ P+++h+eafsaaaknWahfP+i ++ XP_028085469.1 101 SSDD-DEEEEDAVLVNHVVNKPPEKRQRAPSAYNNFIKEEIRRLKAKYPNMTHKEAFSAAAKNWAHFPPIQYK 172 5544.44444455555669*************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MSTAVNHLFD LQEQICYVQC GYCTTILLVS VPCSSLSMVV TVRCGHCTSL LSVNMMKASF 60 VPLHLFANSL NQDNEPKEEI IPQEAETQKV LDKRSPSLVI SSDDDEEEED AVLVNHVVNK 120 PPEKRQRAPS AYNNFIKEEI RRLKAKYPNM THKEAFSAAA KNWAHFPPIQ YKRDGESCGQ 180 GAERKMPRTS DVGEVHVEGN GFRERKASRH SIWTKTPFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-83	YABBY family protein