PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086765.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 733aa MW: 80402.3 Da PI: 7.3198

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	141	242	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v+F + + XP_028086765.1 141 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFINKKKLVSGDAVLFLR--GGD 232 99**************************963.3445679********************************************3..378 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_028086765.1 233 GELRLGIRRA 242 999*9986 PP
2	Auxin_resp	94.2	2.1e-31	300	366	16	82
Auxin_resp 16 nPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 + +as seF+++++k++k+l+++ svGmRfkm+feted+ err++G+v+gv+d+dpvrWp+SkWr+L XP_028086765.1 300 KFQASLSEFIIPFRKFSKSLSHSSSVGMRFKMRFETEDATERRYTGLVTGVNDVDPVRWPGSKWRCL 366 557899************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MCSLIDLNTV DDDDDDSPPP PPPFDSPSSS PAVCLELWHA CAGPLVSLPK KGTVVVYFPQ 60 GHLEHASDFP ATIYHLPPHV FCRVLHVNLH AEAATDEVYA QVSLIPDAQQ IEQKWRQGKI 120 EAASEEEDIE GAVKSITPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE 180 LVAKDLHGIE WKFRHIYRGQ PRRHLLTTGW SAFINKKKLV SGDAVLFLRG GDGELRLGIR 240 RAAQVKTDST FPALSSQKLN VGTISAVVNA ISMRNVFNVR YNPSRVVSHT TDQPLHCTPK 300 FQASLSEFII PFRKFSKSLS HSSSVGMRFK MRFETEDATE RRYTGLVTGV NDVDPVRWPG 360 SKWRCLLVRW DDLESPRHNR VSPWEIEPTG SVSASSSLVA PGMKRNRVGL SSTKPDFPVP 420 RDGTGMSDFG ESFRFQKVLQ GQEILGFNSP CDVHNYCSSE MRRCNPGSVC STISAIGNGV 480 RNPFGDSSVS YDNIGFGESF QFDKVLQGQE TYLNSGYRRG PAANKVQENQ DQGITDGVPS 540 SSSGSGWSVL MQGHNACLRS STPSLQSSSP SSVLMFQQTC TPALNFHSTC RVNQEHEINN 600 QKAFDISDTY CGKEVIQGVS SFAISKGQNQ PGISHSTLAT HSSNGGSQDL GTMCKSSCRL 660 FGFPLTEGRN TTNKDCNPAQ VSSAYNPDTS FLPHGDQHLH PKPPLVTKLI GSSCTKGSDL 720 YAVRDMLLDV ALL

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MCSLIDLNTV DDDDDDSPPP PPPFDSPSSS PAVCLELWHA CAGPLVSLPK KGTVVVYFPQ  60
GHLEHASDFP ATIYHLPPHV FCRVLHVNLH AEAATDEVYA QVSLIPDAQQ IEQKWRQGKI  120
EAASEEEDIE GAVKSITPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE  180
LVAKDLHGIE WKFRHIYRGQ PRRHLLTTGW SAFINKKKLV SGDAVLFLRG GDGELRLGIR  240
RAAQVKTDST FPALSSQKLN VGTISAVVNA ISMRNVFNVR YNPSRVVSHT TDQPLHCTPK  300
FQASLSEFII PFRKFSKSLS HSSSVGMRFK MRFETEDATE RRYTGLVTGV NDVDPVRWPG  360
SKWRCLLVRW DDLESPRHNR VSPWEIEPTG SVSASSSLVA PGMKRNRVGL SSTKPDFPVP  420
RDGTGMSDFG ESFRFQKVLQ GQEILGFNSP CDVHNYCSSE MRRCNPGSVC STISAIGNGV  480
RNPFGDSSVS YDNIGFGESF QFDKVLQGQE TYLNSGYRRG PAANKVQENQ DQGITDGVPS  540
SSSGSGWSVL MQGHNACLRS STPSLQSSSP SSVLMFQQTC TPALNFHSTC RVNQEHEINN  600
QKAFDISDTY CGKEVIQGVS SFAISKGQNQ PGISHSTLAT HSSNGGSQDL GTMCKSSCRL  660
FGFPLTEGRN TTNKDCNPAQ VSSAYNPDTS FLPHGDQHLH PKPPLVTKLI GSSCTKGSDL  720
YAVRDMLLDV ALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein