PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086766.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 732aa MW: 80274.1 Da PI: 7.3198

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	140	241	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v+F + + XP_028086766.1 140 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFINKKKLVSGDAVLFLR--GGD 231 99**************************963.3445679********************************************3..378 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_028086766.1 232 GELRLGIRRA 241 999*9986 PP
2	Auxin_resp	94.2	2.1e-31	299	365	16	82
Auxin_resp 16 nPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 + +as seF+++++k++k+l+++ svGmRfkm+feted+ err++G+v+gv+d+dpvrWp+SkWr+L XP_028086766.1 299 KFQASLSEFIIPFRKFSKSLSHSSSVGMRFKMRFETEDATERRYTGLVTGVNDVDPVRWPGSKWRCL 365 557899************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MCSLIDLNTV DDDDDDSPPP PPPFDSPSSS PAVCLELWHA CAGPLVSLPK KGTVVVYFPQ 60 GHLEHASDFP ATIYHLPPHV FCRVLHVNLH AEAATDEVYA QVSLIPDAQI EQKWRQGKIE 120 AASEEEDIEG AVKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL 180 VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFINKKKLVS GDAVLFLRGG DGELRLGIRR 240 AAQVKTDSTF PALSSQKLNV GTISAVVNAI SMRNVFNVRY NPSRVVSHTT DQPLHCTPKF 300 QASLSEFIIP FRKFSKSLSH SSSVGMRFKM RFETEDATER RYTGLVTGVN DVDPVRWPGS 360 KWRCLLVRWD DLESPRHNRV SPWEIEPTGS VSASSSLVAP GMKRNRVGLS STKPDFPVPR 420 DGTGMSDFGE SFRFQKVLQG QEILGFNSPC DVHNYCSSEM RRCNPGSVCS TISAIGNGVR 480 NPFGDSSVSY DNIGFGESFQ FDKVLQGQET YLNSGYRRGP AANKVQENQD QGITDGVPSS 540 SSGSGWSVLM QGHNACLRSS TPSLQSSSPS SVLMFQQTCT PALNFHSTCR VNQEHEINNQ 600 KAFDISDTYC GKEVIQGVSS FAISKGQNQP GISHSTLATH SSNGGSQDLG TMCKSSCRLF 660 GFPLTEGRNT TNKDCNPAQV SSAYNPDTSF LPHGDQHLHP KPPLVTKLIG SSCTKGSDLY 720 AVRDMLLDVA LL

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MCSLIDLNTV DDDDDDSPPP PPPFDSPSSS PAVCLELWHA CAGPLVSLPK KGTVVVYFPQ  60
GHLEHASDFP ATIYHLPPHV FCRVLHVNLH AEAATDEVYA QVSLIPDAQI EQKWRQGKIE  120
AASEEEDIEG AVKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL  180
VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFINKKKLVS GDAVLFLRGG DGELRLGIRR  240
AAQVKTDSTF PALSSQKLNV GTISAVVNAI SMRNVFNVRY NPSRVVSHTT DQPLHCTPKF  300
QASLSEFIIP FRKFSKSLSH SSSVGMRFKM RFETEDATER RYTGLVTGVN DVDPVRWPGS  360
KWRCLLVRWD DLESPRHNRV SPWEIEPTGS VSASSSLVAP GMKRNRVGLS STKPDFPVPR  420
DGTGMSDFGE SFRFQKVLQG QEILGFNSPC DVHNYCSSEM RRCNPGSVCS TISAIGNGVR  480
NPFGDSSVSY DNIGFGESFQ FDKVLQGQET YLNSGYRRGP AANKVQENQD QGITDGVPSS  540
SSGSGWSVLM QGHNACLRSS TPSLQSSSPS SVLMFQQTCT PALNFHSTCR VNQEHEINNQ  600
KAFDISDTYC GKEVIQGVSS FAISKGQNQP GISHSTLATH SSNGGSQDLG TMCKSSCRLF  660
GFPLTEGRNT TNKDCNPAQV SSAYNPDTSF LPHGDQHLHP KPPLVTKLIG SSCTKGSDLY  720
AVRDMLLDVA LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein