PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086976.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 711aa MW: 78880.1 Da PI: 5.4414

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	484	530	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_028086976.1 484 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 530 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MAAPPSTRLQ SMLQTAVQTV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYDSLS AGESNQQTRR PCAALSPEDL TESEWFYLMC VSFXFPIGVG 120 LPGKAYAKRQ HVWLTGANEV DSKVFSRAIL AKSARVQTVV CIPLLDGVVE LGTTEKVQED 180 IGFVQHVKSF FVDHHTPQPP KPALSEHSTS NPATSSDHAR FHSPPLPAAM YAAVDPPAIA 240 NQIDEEEEEE EEEEEEEEEG ESDSEAGTEA QNPLVLPQGV AVAHHAAAEP SELMQLEMSE 300 DIRLGSPDDG SNNLDSEFQL LAASQAGNPA DQHRRADSYR AESIRRWPVL QDPLSSSLQA 360 QPPSGGPALE ELNQEDTHYS QTVSTILQHQ SSRWSESSSS ATGYLMYSSE SAFSKWMLRP 420 SDHQHHHHVA AVDGTSQWLL KYILLSVPFL HTKCRDENSP KSRDAADSAS RFRKGTPQDE 480 LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLEARA 540 RQNENDQRSR SSSDPQRTSS LSLKEQRSGS GVTALTDRTR VGSDKRKLRI VEGTSGGKLK 600 AVDSPPPAEL PPPPPPPPPP QPMEGVTMQV QVSIIESDAL VELQCPHREG LLLDVMVVLR 660 ELRVEVTAVQ SSLTNGVFVA EMRAKVKENV NGKKPSIVEV KRAIHQIIPQ Y

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MAAPPSTRLQ SMLQTAVQTV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYDSLS AGESNQQTRR PCAALSPEDL TESEWFYLMC VSFXFPIGVG  120
LPGKAYAKRQ HVWLTGANEV DSKVFSRAIL AKSARVQTVV CIPLLDGVVE LGTTEKVQED  180
IGFVQHVKSF FVDHHTPQPP KPALSEHSTS NPATSSDHAR FHSPPLPAAM YAAVDPPAIA  240
NQIDEEEEEE EEEEEEEEEG ESDSEAGTEA QNPLVLPQGV AVAHHAAAEP SELMQLEMSE  300
DIRLGSPDDG SNNLDSEFQL LAASQAGNPA DQHRRADSYR AESIRRWPVL QDPLSSSLQA  360
QPPSGGPALE ELNQEDTHYS QTVSTILQHQ SSRWSESSSS ATGYLMYSSE SAFSKWMLRP  420
SDHQHHHHVA AVDGTSQWLL KYILLSVPFL HTKCRDENSP KSRDAADSAS RFRKGTPQDE  480
LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLEARA  540
RQNENDQRSR SSSDPQRTSS LSLKEQRSGS GVTALTDRTR VGSDKRKLRI VEGTSGGKLK  600
AVDSPPPAEL PPPPPPPPPP QPMEGVTMQV QVSIIESDAL VELQCPHREG LLLDVMVVLR  660
ELRVEVTAVQ SSLTNGVFVA EMRAKVKENV NGKKPSIVEV KRAIHQIIPQ Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	494	ERRRRE
2	490	495	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-105	bHLH family protein