PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028087325.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25055.8 Da    PI: 8.122
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028087325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.68.9e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++g+lye+s+
  XP_028087325.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGRLYEFSN 59
                    79***********************************************95 PP
2K-box73.17.9e-2581176499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      sg++ +e++ ++l++e+  + ++ie ++ ++R+llG++Les+ ++eLq +e+qLeksl +iR++K+ l++e+ie+l++ ek l een++Lr+k 
  XP_028087325.1  81 GSGRKEAEENLQHLKEEAVSMSQKIELIEASKRKLLGDCLESCCINELQLIEEQLEKSLHNIRARKTLLYKEKIEQLKEEEKILTEENQKLREKC 175
                     456668999************************************************************************************97 PP

           K-box  99 e 99 
                     e
  XP_028087325.1 176 E 176
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGRLYEFSNS  60
RCLSISKTIE RYQRNTKEQD GSGRKEAEEN LQHLKEEAVS MSQKIELIEA SKRKLLGDCL  120
ESCCINELQL IEEQLEKSLH NIRARKTLLY KEKIEQLKEE EKILTEENQK LREKCEVRSP  180
HLPIPLLVAP EPNREFSDVE TELFIGLPEQ RTTHSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-59MIKC_MADS family protein