PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028087326.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24683.4 Da    PI: 7.878
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028087326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++g+lye+s+
  XP_028087326.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGRLYEFSN 59
                    79***********************************************95 PP
2K-box73.18.1e-2578173499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      sg++ +e++ ++l++e+  + ++ie ++ ++R+llG++Les+ ++eLq +e+qLeksl +iR++K+ l++e+ie+l++ ek l een++Lr+k 
  XP_028087326.1  78 GSGRKEAEENLQHLKEEAVSMSQKIELIEASKRKLLGDCLESCCINELQLIEEQLEKSLHNIRARKTLLYKEKIEQLKEEEKILTEENQKLREKC 172
                     456668999************************************************************************************97 PP

           K-box  99 e 99 
                     e
  XP_028087326.1 173 E 173
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGRLYEFSNS  60
SISKTIERYQ RNTKEQDGSG RKEAEENLQH LKEEAVSMSQ KIELIEASKR KLLGDCLESC  120
CINELQLIEE QLEKSLHNIR ARKTLLYKEK IEQLKEEEKI LTEENQKLRE KCEVRSPHLP  180
IPLLVAPEPN REFSDVETEL FIGLPEQRTT HSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-61MIKC_MADS family protein