PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028087722.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 107aa    MW: 12370.5 Da    PI: 10.432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028087722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv  +   G  +W+++++  g++R++k+c++rw +yl
   XP_028087722.1 14 KGPWTAEEDAKLVSFILTNGHCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.86.9e-1571107543
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                       +eE++l +d++++lG++ W++Ia++++ gRt++++k++
   XP_028087722.1  71 NEEEEKLVIDLHARLGNR-WSKIASRLP-GRTDNEIKNH 107
                      68****************.*********.*********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    
MGRKPCCDKF VVKKGPWTAE EDAKLVSFIL TNGHCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEEEEKLVID LHARLGNRWS KIASRLPGRT DNEIKNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-69MYB family protein