PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028087852.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 657aa MW: 71935 Da PI: 10.1335

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028087852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.5	2.6e-19	492	579	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn+Y++++GFs+r++ +k+k +++i++r fv +keg+r+ +k++ ++++r+et tgC+ +l vk++ gk++v+++ +eHnHel+ XP_028087852.1 492 FYNAYGERMGFSTRRDCCNKNKFTKQIISRVFVDNKEGFRKVDKRD-PLTKNSRVETSTGCEVQLFVKLDVaIGKFVVSNF-KEHNHELV 579 9****************************************999.9999***************98999999999.69**97 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MKTTKGGKVM NPTDAYRKEL RKKELKRNKK ERKKVREVGI LKKDPETLKE QIDKLEMMKA 60 DGALDKARKH KKRQLEDTLN LVLKKRKEYE EKMREKGEAP VMFSHLGPPR RRTNAEEEER 120 VKHPKPEDSV YYHPTLNPTG APPPGKPPMF KSSIGPRIPL SAASSSDAAS SSMSELEDVD 180 LGVPPPPPPP PPLPHTGDVD AGDSVIPASL PLPPPPPMPP KAAVADLGSP LPPPPLPPPP 240 PGPPPKDHVA IRPPLPPPPP FQQFAQPHPP GTGGSEREKN QSSKSDDSIS KEPVQAHTIL 300 PPPPPPGLPS KVASNQSEGA PSEFEAKNSS GTNDLPKLVP PPPPPRQQPA VLSPALVPNL 360 QPDVLPPGIS RFPPPPPPPG LPGQAVPPGM IVSLIPRPPF GPPPGQALMM RPPLPPGPPP 420 FLQDDYAARP TVPQKPSYVK SAASTVVKRP LAQHTPELTA MLHFDMDMEP NNDCGWKPKL 480 GMPFDSKGVY CFYNAYGERM GFSTRRDCCN KNKFTKQIIS RVFVDNKEGF RKVDKRDPLT 540 KNSRVETSTG CEVQLFVKLD VAIGKFVVSN FKEHNHELVS VDCAHMLPSQ RKISATKAIQ 600 LETGGRQSLG FMKLDQKNYL RTKRQKSSAY GEGGNVLQYF QQKSLENPSS FLCFPVK

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MKTTKGGKVM NPTDAYRKEL RKKELKRNKK ERKKVREVGI LKKDPETLKE QIDKLEMMKA  60
DGALDKARKH KKRQLEDTLN LVLKKRKEYE EKMREKGEAP VMFSHLGPPR RRTNAEEEER  120
VKHPKPEDSV YYHPTLNPTG APPPGKPPMF KSSIGPRIPL SAASSSDAAS SSMSELEDVD  180
LGVPPPPPPP PPLPHTGDVD AGDSVIPASL PLPPPPPMPP KAAVADLGSP LPPPPLPPPP  240
PGPPPKDHVA IRPPLPPPPP FQQFAQPHPP GTGGSEREKN QSSKSDDSIS KEPVQAHTIL  300
PPPPPPGLPS KVASNQSEGA PSEFEAKNSS GTNDLPKLVP PPPPPRQQPA VLSPALVPNL  360
QPDVLPPGIS RFPPPPPPPG LPGQAVPPGM IVSLIPRPPF GPPPGQALMM RPPLPPGPPP  420
FLQDDYAARP TVPQKPSYVK SAASTVVKRP LAQHTPELTA MLHFDMDMEP NNDCGWKPKL  480
GMPFDSKGVY CFYNAYGERM GFSTRRDCCN KNKFTKQIIS RVFVDNKEGF RKVDKRDPLT  540
KNSRVETSTG CEVQLFVKLD VAIGKFVVSN FKEHNHELVS VDCAHMLPSQ RKISATKAIQ  600
LETGGRQSLG FMKLDQKNYL RTKRQKSSAY GEGGNVLQYF QQKSLENPSS FLCFPVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	87	KKRQLEDTLNLVLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-23	FAR1 family protein