PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028088020.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 452aa MW: 49609.1 Da PI: 7.9046

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028088020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.6e-05	338	377	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_028088020.1 338 VRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 377 57788999*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MESTNLHHHH HHQQQHQHQH QHHQLQDQLI GSSPPLASPS CYGLGTTTHA WTPILNPSNF 60 SPTSNGISTN SRDSRQQNDY LVPSLNSSVI QDLGFQWANG NFTTTQSTSH DLHLARKGDL 120 PEDHYPKFTE MIHSNTTSSS SIEDFHLQQQ ATSYAKNEQR DLNDLSEKLL LRNFSGCQIN 180 GIQLPAGEFY SGGGGGATVA PPSRGNFSQI FPTINISNLN QSSSAISSSM DMNMQALDLF 240 TSGRFSGCLN QVSHDNLGLY KDSLSYGVGH MHQQSSHNRP SNSPTSKISP FTSGITETKR 300 PSSHLEPNGP PAAQRITIRF TLFCPPFRYG CCVELNQVRK EKLGDRIAAL QQLVAPFGKT 360 DTASVLMEAI GYIKFLQNQV ETLSVPYMKS SRNKTSRTIR GGQGSAIQIH GNEEPKRDLR 420 SRGLCLLPLS CLSYVTDGGG GVWPPANFST GI

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MESTNLHHHH HHQQQHQHQH QHHQLQDQLI GSSPPLASPS CYGLGTTTHA WTPILNPSNF  60
SPTSNGISTN SRDSRQQNDY LVPSLNSSVI QDLGFQWANG NFTTTQSTSH DLHLARKGDL  120
PEDHYPKFTE MIHSNTTSSS SIEDFHLQQQ ATSYAKNEQR DLNDLSEKLL LRNFSGCQIN  180
GIQLPAGEFY SGGGGGATVA PPSRGNFSQI FPTINISNLN QSSSAISSSM DMNMQALDLF  240
TSGRFSGCLN QVSHDNLGLY KDSLSYGVGH MHQQSSHNRP SNSPTSKISP FTSGITETKR  300
PSSHLEPNGP PAAQRITIRF TLFCPPFRYG CCVELNQVRK EKLGDRIAAL QQLVAPFGKT  360
DTASVLMEAI GYIKFLQNQV ETLSVPYMKS SRNKTSRTIR GGQGSAIQIH GNEEPKRDLR  420
SRGLCLLPLS CLSYVTDGGG GVWPPANFST GI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-54	bHLH family protein