PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028088331.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 256aa MW: 28286 Da PI: 7.093

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028088331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.7	3.6e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC l+p++ p++q++++ +++k++G++ +l+ll+a p++ r+ +++sl+yeA+ r+ +P++G+vg++ + +++ +q+ XP_028088331.1 4 SCNGCRVLRKGCTDDCSLRPCLqwinsPDSQSNATLFLAKFYGRAGLLNLLNAGPNHLRPSIFRSLLYEACGRIINPISGSVGLLCSNNWDRCQE 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++++l ++ XP_028088331.1 99 AVDAVLNGS 107 999988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MRTSCNGCRV LRKGCTDDCS LRPCLQWINS PDSQSNATLF LAKFYGRAGL LNLLNAGPNH 60 LRPSIFRSLL YEACGRIINP ISGSVGLLCS NNWDRCQEAV DAVLNGSPIM KLNFDDADAA 120 AAQPIMPLKG CDIRHLTKDS DDNIRHRKTP FKRSGGRGKS RFDESTTEPA RFCVAKWGGN 180 HPEEEVNRHP SHDSSMFSVE TLEASLLVNR AVKCEPQEIE VGLDLSLGFN PVFHPQVPTT 240 VEERKLIQFF DGGGDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-62	LBD family protein