PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089226.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 294aa MW: 33247.3 Da PI: 7.8529

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d+++ +G g W++ +++ g++R++k+c++rw++yl XP_028089226.1 14 RGAWTAMEDKILTDYIRVHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	48.6	1.9e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_028089226.1 67 RGNISRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 788999**************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MGRRPCCAKE GLNRGAWTAM EDKILTDYIR VHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SRDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKIQVLS 120 QPSATSTISN RYNSSNPQSK QNPSRTTDHS VAQPPLPNTE PSRLVRTKAS RCTKVFIRPD 180 HQNVTIHHNV GVGVAASDPG DDISPFISAK DDTSDFMMDF EMDENFLSDF LNTDFPPLYE 240 FHNDLKGDTT DTVTSSSSLD SNQNLLSSNE MLQSSDLQSL APLLDPCMDW LQDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-62	MYB family protein