PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028090747.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 168aa    MW: 18633.2 Da    PI: 8.2877
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028090747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY205.71.7e-6321562170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +v+ +s++vCyv+CnfCntilavsvPst ++++vtvrCG C+ llsvn+    q ++ ++ l+++   +           l+   +++ s+st +
  XP_028090747.1   2 SVDMASDRVCYVHCNFCNTILAVSVPSTNMLTIVTVRCGLCAYLLSVNMGALLQSVPLQD-LQKQQSSS-----------LEDASKESGSSSTCN 84 
                     78899*********************************************9999999888.34333333...........333333333333333 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +  +  e+ d+e p +pp i PPekrqrvPsaynrfikeeiqrik snPdishreafs+aaknWah+P+ihfgl
  XP_028090747.1  85 KFGS-FESADHEPPTMPP-ICPPEKRQRVPSAYNRFIKEEIQRIKVSNPDISHREAFSTAAKNWAHYPRIHFGL 156
                     3322.3566778888888.89***************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MSVDMASDRV CYVHCNFCNT ILAVSVPSTN MLTIVTVRCG LCAYLLSVNM GALLQSVPLQ  60
DLQKQQSSSL EDASKESGSS STCNKFGSFE SADHEPPTMP PICPPEKRQR VPSAYNRFIK  120
EEIQRIKVSN PDISHREAFS TAAKNWAHYP RIHFGLKLDG NKQAKLNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-62YABBY family protein