PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028091174.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 357aa MW: 40087 Da PI: 6.8871

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028091174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_028091174.1 13 RGLWSPEEDEKLIRHITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	53.2	6.9e-17	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_028091174.1 66 RGTFTEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIRHITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGTFT EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLSS SNRTANKVLP HTHHQQNTSV FSITTSQTND MQTPLVTLVP PSDTNSINHI 180 PISLHEYQSP SFAPTTRNQS GHSLMEFANS TDHLSHTFLM LSRQYGTKGC PGSETDGPIP 240 FGTRSSMETT TVPSSSMNNL YGFGFIDENS MWGSDLEHFD PTRGGMVMQL QEQQHPQQEK 300 GCEGEADKVN ESISSGQNMG TSLMESSNFD FEFVESALLP CGMYCNVNPM DPLAWDC

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLIRHITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGTFT EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLSS SNRTANKVLP HTHHQQNTSV FSITTSQTND MQTPLVTLVP PSDTNSINHI  180
PISLHEYQSP SFAPTTRNQS GHSLMEFANS TDHLSHTFLM LSRQYGTKGC PGSETDGPIP  240
FGTRSSMETT TVPSSSMNNL YGFGFIDENS MWGSDLEHFD PTRGGMVMQL QEQQHPQQEK  300
GCEGEADKVN ESISSGQNMG TSLMESSNFD FEFVESALLP CGMYCNVNPM DPLAWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-87	MYB family protein