PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028091774.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 147aa MW: 16327.3 Da PI: 8.4667

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028091774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.2e-11	60	85	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ lC++f+rtG C+yGd+Ck+ H++ XP_028091774.1 60 GRGLCNRFLRTGSCPYGDSCKYFHPK 85 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence
MPLGKYYCDY CEKQFQDTPS ARKRHLQGVQ HQRSKALWYN NINNNSLRDA NQQFHPDSFG 60 RGLCNRFLRT GSCPYGDSCK YFHPKQNLGV PDNIQSPLIP ESQLAGGPPF PGGVVGDGMG 120 ISLGNLPPSL KPPPEGGYPT FPYIDWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	7e-41	C3H family protein