PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028092113.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 235aa    MW: 25080.5 Da    PI: 8.467
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028092113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.92.6e-41491481100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+ dPvyG++g i++lqqq+++ +ael+
  XP_028092113.1  49 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLADPVYGCMGAISALQQQVQSIQAELN 143
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028092113.1 144 AVRAE 148
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MSRERERLDE IGKKIKREID ASWQMGRRHI VGGGGGMGQG GSSLNTVTPC AACKLLRRRC  60
AEECPFSPYF SPHEPQKFAA VHKVFGASNV SKLLMEVPES QRADAANSLV YEANVRLADP  120
VYGCMGAISA LQQQVQSIQA ELNAVRAEIL KYKYREAANN IMASTTHSAS LLVSSGAVSV  180
AEMPPAQTHP PPPPPPPPPP PSVVVSPSST SLYTSPATTT AGYNSILSGS VPYFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-76LBD family protein