PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028092352.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29114 Da    PI: 4.7832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028092352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-161152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+s r+ t+ +Rr+gi+KKA  LS+LCd+e+ v+++s++ 
  XP_028092352.1 11 IVNDSSRKSTLKRRRAGIFKKAGDLSTLCDVEIGVLVYSQDE 52
                    789************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MTGNKIKLEW IVNDSSRKST LKRRRAGIFK KAGDLSTLCD VEIGVLVYSQ DEDDLAVWPS  60
YGHMKQMFER FLSIPIVERS EKMTTYEGLL TQRVTQETHK NNMEKKNNDK KEIQEIMNQI  120
FEGSNLYQLD IMRLNYLSLL TGDKLMQLEE RERARRQHAL RSTDTLAPAP RPRMIEVDEA  180
FQAHTSTEAT CIEQLMNDNW FIETMALNQD MPGPSGVSDM GMPSGSVVDR MNGDNEEDLP  240
EDLNAFFPHI YSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-19M-type_MADS family protein