PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028092726.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 211aa    MW: 23900.5 Da    PI: 8.9463
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028092726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2031.8e-6252112210
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++c +av+  d + +++ L+r+++++s +gd ++Rla+yf++AL+arla++++ ly  + ps+t + + +++l++++++++++P+ k+s+l
  XP_028092726.1   5 QTLLTQCSQAVARADVRSVNEQLNRIRQHSSAQGDGIERLAHYFANALEARLAGTGTALY--V-PSSTMRISAADVLKSYETYVKACPFNKMSNL 96 
                     689***************************************************888888..3.3344446699********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN+ I++ +++++++Hii f+i +G+QW++L++ L++Rp+gpp+lRiTg++ p++g   +e++e+tg+rL+ ++++++v+fe+++ +ak++e++
  XP_028092726.1  97 YANRSIMKLAQTATTLHIIHFGILYGFQWACLIHHLSARPGGPPKLRITGIDFPQPGfhPAERVEQTGRRLETYCKRFNVQFEYTA-IAKKWETI 190
                     ********************************************************999***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlql 210
                     el+eL+++++E+l+Vn+ l+l
  XP_028092726.1 191 ELDELKIDRDEVLVVNCLLRL 211
                     *****************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MFDLQTLLTQ CSQAVARADV RSVNEQLNRI RQHSSAQGDG IERLAHYFAN ALEARLAGTG  60
TALYVPSSTM RISAADVLKS YETYVKACPF NKMSNLYANR SIMKLAQTAT TLHIIHFGIL  120
YGFQWACLIH HLSARPGGPP KLRITGIDFP QPGFHPAERV EQTGRRLETY CKRFNVQFEY  180
TAIAKKWETI ELDELKIDRD EVLVVNCLLR L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.14e-86GRAS family protein