PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028093089.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25911.6 Da    PI: 9.2195
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028093089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs tgkl+e+ss
  XP_028093089.1  9 KKIDNVTSRQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEFSS 59
                    68***********************************************96 PP
2K-box45.82.7e-161001702798
           K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++  e+R+l Ge+L+ L+ +eL++Le+ Le +l+++ ++K e++ ++i    +ke +l een  L++k+
  XP_028093089.1 100 VNKKIH-ELRQLRGEELQGLDAEELKNLEKSLEGGLSRVLKTKGEIMEKEITARERKEARLVEENVWLKQKV 170
                     444554.56************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MVRQRIQIKK IDNVTSRQVT FSKRRKGLFK KAQELSTLCD AEIALIVFSA TGKLFEFSSS  60
SMRQVIERHN LESGNLVNLN QPSLEQQLEN SGCTILSKEV NKKIHELRQL RGEELQGLDA  120
EELKNLEKSL EGGLSRVLKT KGEIMEKEIT ARERKEARLV EENVWLKQKV PMEIVKIGQT  180
HDDQQGQSAE FITNNGSSAA PPQDNGSSDT SLKLGLPFPE LNLRARMINA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-83MIKC_MADS family protein