PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028093246.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB_related
Protein Properties Length: 937aa    MW: 107742 Da    PI: 8.4065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028093246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-08731770345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WTteE el  ++++q+G++ W+  a  +g  + + ++k+ w+
   XP_028093246.1 731 SWTTEELELVRKYHEQHGPK-WRELADALG--KHRFHLKDAWR 770
                      7*****************99.********9..55666766665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    
MLNGVEDGFE LSKEDKRRKK DKKKAEVSSD VELDGTQNED IDIKDISVHE AAIFEGKMGK  60
KTKKNKKNEA SASKEVSDYN GAMLNGVEDG FELSKEDKRR KKDKKKAEVS SDVELDGTQN  120
EDIDIKDISV HEAAIFEGKM GKKTKKNKKN EASASKEVSD YNGAMLNGVE DGFELSKEDK  180
RRKKDKKKAE VSSDVELDGT QNEDIDIKDI SVHEAAIFEG KMGKKTKKNK KNEASASKEV  240
SDYNGAMLNG VEDGFELSKE DKRRKKDKKK AEVSSDVELD GTQNEDIDIK DISVHEAAIF  300
EGKMGKKTKK NKKNEASASK EVSDYNGAML NGVEDGFELS KEDKRRKKDK KKAEVSIDVE  360
LDGTHNEDIN MKDYAEVDDN YRREKEKRKK KRRKLEPGED NDESNNEIHM GGEERRCLQI  420
DDDKDLGNDS ESKARKEKKK RHKGDRKKDK KESVSSPMKV CKDKETEKDE VVKDQKSSRK  480
DNIADMKNGE EQIEKKKTHK GRKGKEIIDF KGKKKSTATE DVGKVREYCD VDVSDKVETK  540
KRKREKKKGK DDLGAGMQEM MAEEFGNKSS STEDKDFGYN NRNHHSARNK MQEIETKNGD  600
KGNRKKPNSF EPGSEDPKPK TKSKKVRFSG NIEVFPSSDG PSKGKEKNED EKLVQGKRFS  660
PEEDERIKDA VSNYIRYNDL GEDGLAMVLR CGSHPKIRHC WKDISAVLPH RPLKSVYYRA  720
HIFFERAESR SWTTEELELV RKYHEQHGPK WRELADALGK HRFHLKDAWR RIKLPNINKG  780
HWSQEEYQNL FDLVNMDLRM KAYEEKKSKH GMLRDNISRG AISDKLLTRS DKVCCEKWYH  840
QLSSSMVAEG NWADTDDYRL LDTLFSLDAC CIEDVDWDYL LDHRSGDLCR KRWNQMINHI  900
GEHKNKSFAE QVEILTNRYC PDLLEAREAW DNKPFVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722RRKKDK
263105KKNKKNEASASKEVSDYNGAMLNGVEDGFELSKEDKRRKKDKK
399104RRKKDK
4145187KKNKKNEASASKEVSDYNGAMLNGVEDGFELSKEDKRRKKDKK
5181186RRKKDK
6227269KKNKKNEASASKEVSDYNGAMLNGVEDGFELSKEDKRRKKDKK
7263268RRKKDK
8309351KKNKKNEASASKEVSDYNGAMLNGVEDGFELSKEDKRRKKDKK
9345350RRKKDK
10382395RREKEKRKKKRRKL
11383392REKEKRKKKR
12386395EKRKKKRRKL
13387393KRKKKRR
14388394KRKKKRR
15388395RKKKRRKL
16389393KKKRR
17389394KKKRRK
18390394KKRRK
19433448KARKEKKKRHKGDRKK
20436448KEKKKRHKGDRKK
21438464KKKRHKGDRKKDKKESVSSPMKVCKDK
22495499KKKTH
23540547RKKKRRKL
24543551KREKKKGKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-128MYB_related family protein