PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028093404.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24310 Da    PI: 10.0546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028093404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725.1e-231559246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    r +n+snr vtfskRr g++KKA+EL++LC+ae+a+i+fs+  k 
  XP_028093404.1 15 RMSNESNRMVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKA 59
                    789*************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MERKGKGRQK IAMTRMSNES NRMVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKAF  60
SFGHPCVDTV VDCFLSRNSL PNSSSLQLVK ARCNANVSKL NLQLTEALDM LEAEKKRGEE  120
LNKMRKASRD KCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSEKIQME ESNPSRFFEA  180
GSSSMGGRVG GTSDGVKVSG LRLSMTPHGY TLDYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-56M-type_MADS family protein