PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028095056.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 465aa MW: 52983 Da PI: 5.9013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028095056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.4e-12	256	307	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_028095056.1 256 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 307 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MPHYRYISSL PIFYFRPYYQ LVYGCTLSFS SSYINTPLHF HCCFSHSCFF SLSLSNKAAL 60 PGNFPELDYS IDHHQHQHQH LMMKPRIGET SGDNSNQMVD YMLNNPQPQH MPSGFCSSTS 120 PDKLSFADVM QFADFGPKLG LNQTKISEEE TAIDPVYFLK FPVLNDKLQD DEPLMIPQDV 180 EDNEDRFKGL SVESSKAREI EQEGEREDEE ARGSENASVE LRFLGENLRK SPVTEVMKNK 240 RKRPRTIKTS EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG DQASIIGGAI 300 EFVRELEQLL QCLESQKRRR LYGDPPPRPP TGDSSSLAIP QPQPPLYPPV SIPNDQLKLM 360 EFESGLQEEI AESKSCLADV EVKMLGFDAM IKILSRRRPG QLIKTIAALE DLQLNILHTN 420 ITTIEQTVLY SFNVKVGSEA RFTAEDIASS VQQIFSFIHA NSTTI

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MPHYRYISSL PIFYFRPYYQ LVYGCTLSFS SSYINTPLHF HCCFSHSCFF SLSLSNKAAL  60
PGNFPELDYS IDHHQHQHQH LMMKPRIGET SGDNSNQMVD YMLNNPQPQH MPSGFCSSTS  120
PDKLSFADVM QFADFGPKLG LNQTKISEEE TAIDPVYFLK FPVLNDKLQD DEPLMIPQDV  180
EDNEDRFKGL SVESSKAREI EQEGEREDEE ARGSENASVE LRFLGENLRK SPVTEVMKNK  240
RKRPRTIKTS EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG DQASIIGGAI  300
EFVRELEQLL QCLESQKRRR LYGDPPPRPP TGDSSSLAIP QPQPPLYPPV SIPNDQLKLM  360
EFESGLQEEI AESKSCLADV EVKMLGFDAM IKILSRRRPG QLIKTIAALE DLQLNILHTN  420
ITTIEQTVLY SFNVKVGSEA RFTAEDIASS VQQIFSFIHA NSTTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	268	RMTHIAVERNRR
2	317	321	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-131	bHLH family protein