PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028095219.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24120.9 Da    PI: 9.7563
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028095219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.8e-201557244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    r +n+sn  +tfskRr g++KKA+EL++LC+ae+a+i+fs+  
  XP_028095219.1 15 RMSNESNLIITFSKRRSGLFKKASELCTLCGAEIAIIVFSPGK 57
                    689*************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MERKSKGRQK IAMTRMSNES NLIITFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKAL  60
SFGHPCVDTV VDCFLSRNSP PNSGSLQLVK AHCNVNVSKL NLQLTEALDM LEAEKKRGEE  120
LNKMRKASRD GCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSKKIQME ESNPWRFIEA  180
GSSSMGGHVG GASHDVKVSG LVLSMTSHGY TLGYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-61M-type_MADS family protein