PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096026.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 1122aa MW: 123580 Da PI: 6.6588

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.7	7.9e-22	137	238	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_028096026.1 137 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldftMQPPAQ--ELQSRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 227 99***************************96555544..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_028096026.1 228 KQQLLLGIRRA 238 8889**997 PP
2	Auxin_resp	119.5	2.6e-39	263	346	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_028096026.1 263 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 346 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence
MKMPANGAGS CPPATASGNS SEGSGEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS 60 EQVAASMKKG VDSQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVPSFDKDAL 120 LRSDLSMKAN KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFTM QPPAQELQSR 180 DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR 240 QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVVPL AKYYKAVCSN 300 QISLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR 360 VSIWEIEPVT APFFICPTPP FFGSKRPRQL GMPGNGYDES CGLENLFKRT MPWLGDDMYM 420 KDPQSLPGLS LVQWMNMQQN PSLGNSLQPN YLHSLSGSVL QNLAGADLTR QLGGLPSPQI 480 PQQNNLQFNT QKPTQQTQLD QLQKLPAAAT LNPLGSIIQQ QQQQQQQFVD ITQPPNQNLP 540 STQVQAQLLQ SQALGQTQNI LQQQPSIQNH QLHRNLSQNL QLQQQIIGQN QQQNLMPSQL 600 PDQVNQQLQM SENQIQFQLL QNLHQQQQAI LAQQQSTLQQ PPQLPQVQDQ QRQLLDASQS 660 FSRAATPSQM VDMPQATAIA TSLPPQSHLI PQQMSKTNNS QPNIRFSHPP QQQPKLQQHQ 720 QPGVLPELPG HLGHTPTSNQ LSTTGSSLLT GAAGGGQSGL TDDVPSCSTS PSTNNCPGLV 780 QPIMNGRAQR SMAIGEEMTQ SSATLLSSSG LETMSANANL VKDLQLKPDF KPSLNISKSQ 840 NQGFLAPQTY LNAAGTQMDY LDTSSSATSV CLSQNDVHLQ QNIPLSFNQQ SLLFRDTSQD 900 GEVQGDPRSS VRFGANTDSQ LGMPMIPDPL LTKGMVGSEK DFSNNLSSGG GLLSTYENPK 960 DTQPELSSSM VSQSFGVPDM TFNSLDSTIN DSSFLSRGAW APPSQFQRMR TYTKVYKRGA 1020 VGRSIDITRY SGYDELKQDL ARRFGIEGQL EDRHRIGWKL VYVDHENDVL LVGDDPWEEF 1080 VNCVRCIKIL SPQEVQAMSL DGDFGNNVLP NQACSSSDGG NV

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence

MKMPANGAGS CPPATASGNS SEGSGEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKKG VDSQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVPSFDKDAL  120
LRSDLSMKAN KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFTM QPPAQELQSR  180
DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR  240
QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVVPL AKYYKAVCSN  300
QISLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR  360
VSIWEIEPVT APFFICPTPP FFGSKRPRQL GMPGNGYDES CGLENLFKRT MPWLGDDMYM  420
KDPQSLPGLS LVQWMNMQQN PSLGNSLQPN YLHSLSGSVL QNLAGADLTR QLGGLPSPQI  480
PQQNNLQFNT QKPTQQTQLD QLQKLPAAAT LNPLGSIIQQ QQQQQQQFVD ITQPPNQNLP  540
STQVQAQLLQ SQALGQTQNI LQQQPSIQNH QLHRNLSQNL QLQQQIIGQN QQQNLMPSQL  600
PDQVNQQLQM SENQIQFQLL QNLHQQQQAI LAQQQSTLQQ PPQLPQVQDQ QRQLLDASQS  660
FSRAATPSQM VDMPQATAIA TSLPPQSHLI PQQMSKTNNS QPNIRFSHPP QQQPKLQQHQ  720
QPGVLPELPG HLGHTPTSNQ LSTTGSSLLT GAAGGGQSGL TDDVPSCSTS PSTNNCPGLV  780
QPIMNGRAQR SMAIGEEMTQ SSATLLSSSG LETMSANANL VKDLQLKPDF KPSLNISKSQ  840
NQGFLAPQTY LNAAGTQMDY LDTSSSATSV CLSQNDVHLQ QNIPLSFNQQ SLLFRDTSQD  900
GEVQGDPRSS VRFGANTDSQ LGMPMIPDPL LTKGMVGSEK DFSNNLSSGG GLLSTYENPK  960
DTQPELSSSM VSQSFGVPDM TFNSLDSTIN DSSFLSRGAW APPSQFQRMR TYTKVYKRGA  1020
VGRSIDITRY SGYDELKQDL ARRFGIEGQL EDRHRIGWKL VYVDHENDVL LVGDDPWEEF  1080
VNCVRCIKIL SPQEVQAMSL DGDFGNNVLP NQACSSSDGG NV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein