PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028096064.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 248aa    MW: 26864.2 Da    PI: 6.5056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028096064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.11.9e-22957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie ks+ qvtfskRr+gi+KKA EL vLC+a vavi+ s+ gk++ +
  XP_028096064.1  9 KKIEKKSQLQVTFSKRRAGIFKKAGELGVLCGAHVAVIVTSPAGKVFAF 57
                    68********************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGLQKIEIKK IEKKSQLQVT FSKRRAGIFK KAGELGVLCG AHVAVIVTSP AGKVFAFGNP  60
SVDSVIDRFL SENPNPNPNS HGFDTCHDDE LHQVHQQSIN PNPNSNSQCS ERHRVSKNPN  120
PNPNSQCLDM CHEEEVRQVQ QLSKKYVKAV GKLEAEKERG KAVAELNSGG GGGGFWWDES  180
VEGLELHELE QYVAALEVLK SNLLARADEM AVAASGFPAN FLASNGVVVA NAFGSAECSG  240
FGFDCKPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29M-type_MADS family protein