PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028096092.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27156.7 Da    PI: 9.685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028096092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.4e-231558245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    r +nksnr vtfskRr g++KKA+EL++LC+ae+a+i+fs+  k
  XP_028096092.1 15 RMSNKSNRIVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPCKK 58
                    789*************************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MERKSRGRQK IAMTRMSNKS NRIVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPCKKAF  60
SFGYPCVDTV VDCFLSRNSP PNSGSLQLVK AHCNVNVSKL NLQLTEALDM LEAEKKRGEE  120
LNKMRKASRD GCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSKKIQME ESNPWRFIED  180
SMGGHVGGAS HDVKVSGLVL SMTPHGYTLG YGHGIFLIFC RLLLRRTCMF AYDFGFNLLE  240
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-57M-type_MADS family protein