PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028096094.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24236.8 Da    PI: 9.787
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028096094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34e-231559246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    r +nksnr vtfskRr g++KKA+EL++LC+ae+a+i+fs+  k 
  XP_028096094.1 15 RMSNKSNRIVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKA 59
                    789*************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MERKSRGRQK IAMTRMSNKS NRIVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKAF  60
SFGHPCVDTV VDCFLSRNSL PNSGSHQLVK AHCNANVSNL NLQLTEALDM LEAEKKRGEE  120
LNKMRKASRD GCWWEAPVSE LGLQQLEQLK VAMEDLKKNV AKQSEKIQME ESNPWRFFEA  180
GSSSMGGHVG GASQDVKVSG LGLSMTPHGY TFGYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-61M-type_MADS family protein