PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096775.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HRT-like

Protein Properties

Length: 558aa MW: 62412.6 Da PI: 9.6217

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	48	2.1e-15	263	291	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 iCGv+l++GsvC+r+Pv+gRKRC eH G XP_028096775.1 263 ICGVALSHGSVCRRPPVEGRKRCVEHRGI 291 8*************************996 PP
2	HRT-like	54.4	2.1e-17	308	338	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l+dG++C+rq v+gRKRCeeHKG++i XP_028096775.1 308 ICGITLNDGTPCRRQSVHGRKRCEEHKGRKI 338 8***************************997 PP
3	HRT-like	55.9	6.8e-18	397	427	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dG++C+r+Pv gRKRCeeHK mR+ XP_028096775.1 397 ICGVNFQDGTFCTRKPVVGRKRCEEHKWMRV 427 8*****************************7 PP
4	HRT-like	56.9	3.5e-18	477	506	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++l dGs C+r+P +gRKRC++HKGmR XP_028096775.1 477 TCGATLADGSSCRRPPTEGRKRCWQHKGMR 506 7****************************9 PP
5	HRT-like	56.8	3.7e-18	526	555	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+ l++Gs+C+r Pv+gRKRCe+HKGmR XP_028096775.1 526 ICGASLRNGSICSRMPVHGRKRCEQHKGMR 555 8****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MEMVVSKQCD AVWDRRSKRE DCDLTKHDPD FSQWKALVGP SDWEDHSSGK EGAERYRVYN 60 LPYCSSCSGL YELGIALPCT RSGREISKLY PDRIIPVYLG QSDDIKCRLQ CYGREGAHLE 120 NGNSIGLFSD IFSRGCSIVY RWAPMKSKRE AEKTEARLLD KFDYAWNKGN NGVRRDNDIL 180 EKLDRSTSSN TQMLAIAKKL QNFHQKKIGI KIDACKPLLL QNGSNIYTNL DSNDFPSRIL 240 KIGRSQPRLV SLSFGFNEDT SHICGVALSH GSVCRRPPVE GRKRCVEHRG IKTNGLTSKL 300 ITEGSFSICG ITLNDGTPCR RQSVHGRKRC EEHKGRKIKG SSLSESVTEG KQRYVHGPVL 360 GPGNDYGQIS SESRKFHIPE SPVLSKRSVI NKNLDTICGV NFQDGTFCTR KPVVGRKRCE 420 EHKWMRVDGS RSKLPVANLP SVFDSSGISS SSGQKHYNNS YQSVSYKCVV NESFSSTCGA 480 TLADGSSCRR PPTEGRKRCW QHKGMRENSA SSYNFTSMYG GFSSDICGAS LRNGSICSRM 540 PVHGRKRCEQ HKGMRAAF

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MEMVVSKQCD AVWDRRSKRE DCDLTKHDPD FSQWKALVGP SDWEDHSSGK EGAERYRVYN  60
LPYCSSCSGL YELGIALPCT RSGREISKLY PDRIIPVYLG QSDDIKCRLQ CYGREGAHLE  120
NGNSIGLFSD IFSRGCSIVY RWAPMKSKRE AEKTEARLLD KFDYAWNKGN NGVRRDNDIL  180
EKLDRSTSSN TQMLAIAKKL QNFHQKKIGI KIDACKPLLL QNGSNIYTNL DSNDFPSRIL  240
KIGRSQPRLV SLSFGFNEDT SHICGVALSH GSVCRRPPVE GRKRCVEHRG IKTNGLTSKL  300
ITEGSFSICG ITLNDGTPCR RQSVHGRKRC EEHKGRKIKG SSLSESVTEG KQRYVHGPVL  360
GPGNDYGQIS SESRKFHIPE SPVLSKRSVI NKNLDTICGV NFQDGTFCTR KPVVGRKRCE  420
EHKWMRVDGS RSKLPVANLP SVFDSSGISS SSGQKHYNNS YQSVSYKCVV NESFSSTCGA  480
TLADGSSCRR PPTEGRKRCW QHKGMRENSA SSYNFTSMYG GFSSDICGAS LRNGSICSRM  540
PVHGRKRCEQ HKGMRAAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-98	HRT-like family protein