PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096776.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HRT-like

Protein Properties

Length: 492aa MW: 54774.2 Da PI: 10.0216

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	48.2	1.8e-15	197	225	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 iCGv+l++GsvC+r+Pv+gRKRC eH G XP_028096776.1 197 ICGVALSHGSVCRRPPVEGRKRCVEHRGI 225 8*************************996 PP
2	HRT-like	54.6	1.8e-17	242	272	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l+dG++C+rq v+gRKRCeeHKG++i XP_028096776.1 242 ICGITLNDGTPCRRQSVHGRKRCEEHKGRKI 272 8***************************997 PP
3	HRT-like	56.2	5.9e-18	331	361	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dG++C+r+Pv gRKRCeeHK mR+ XP_028096776.1 331 ICGVNFQDGTFCTRKPVVGRKRCEEHKWMRV 361 8*****************************7 PP
4	HRT-like	57.1	3e-18	411	440	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++l dGs C+r+P +gRKRC++HKGmR XP_028096776.1 411 TCGATLADGSSCRRPPTEGRKRCWQHKGMR 440 7****************************9 PP
5	HRT-like	57	3.2e-18	460	489	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+ l++Gs+C+r Pv+gRKRCe+HKGmR XP_028096776.1 460 ICGASLRNGSICSRMPVHGRKRCEQHKGMR 489 8****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MEGLYELGIA LPCTRSGREI SKLYPDRIIP VYLGQSDDIK CRLQCYGREG AHLENGNSIG 60 LFSDIFSRGC SIVYRWAPMK SKREAEKTEA RLLDKFDYAW NKGNNGVRRD NDILEKLDRS 120 TSSNTQMLAI AKKLQNFHQK KIGIKIDACK PLLLQNGSNI YTNLDSNDFP SRILKIGRSQ 180 PRLVSLSFGF NEDTSHICGV ALSHGSVCRR PPVEGRKRCV EHRGIKTNGL TSKLITEGSF 240 SICGITLNDG TPCRRQSVHG RKRCEEHKGR KIKGSSLSES VTEGKQRYVH GPVLGPGNDY 300 GQISSESRKF HIPESPVLSK RSVINKNLDT ICGVNFQDGT FCTRKPVVGR KRCEEHKWMR 360 VDGSRSKLPV ANLPSVFDSS GISSSSGQKH YNNSYQSVSY KCVVNESFSS TCGATLADGS 420 SCRRPPTEGR KRCWQHKGMR ENSASSYNFT SMYGGFSSDI CGASLRNGSI CSRMPVHGRK 480 RCEQHKGMRA AF

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MEGLYELGIA LPCTRSGREI SKLYPDRIIP VYLGQSDDIK CRLQCYGREG AHLENGNSIG  60
LFSDIFSRGC SIVYRWAPMK SKREAEKTEA RLLDKFDYAW NKGNNGVRRD NDILEKLDRS  120
TSSNTQMLAI AKKLQNFHQK KIGIKIDACK PLLLQNGSNI YTNLDSNDFP SRILKIGRSQ  180
PRLVSLSFGF NEDTSHICGV ALSHGSVCRR PPVEGRKRCV EHRGIKTNGL TSKLITEGSF  240
SICGITLNDG TPCRRQSVHG RKRCEEHKGR KIKGSSLSES VTEGKQRYVH GPVLGPGNDY  300
GQISSESRKF HIPESPVLSK RSVINKNLDT ICGVNFQDGT FCTRKPVVGR KRCEEHKWMR  360
VDGSRSKLPV ANLPSVFDSS GISSSSGQKH YNNSYQSVSY KCVVNESFSS TCGATLADGS  420
SCRRPPTEGR KRCWQHKGMR ENSASSYNFT SMYGGFSSDI CGASLRNGSI CSRMPVHGRK  480
RCEQHKGMRA AF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-77	HRT-like family protein