PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028097526.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 495aa    MW: 56845.5 Da    PI: 8.0047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028097526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-171972154
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                    r++R +++++q++ Le++Fe++++p++++r +L k++gLt  q+k+WFqN+R+ 
  XP_028097526.1 19 RKRRYRHSPYQTQMLETFFEQCQHPNERQRCQLGKEVGLTPLQIKFWFQNKRTL 72
                    899*************************************************85 PP
2START50.37.2e-1723136219131
                     TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT......EEEE CS
           START  19 pgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg......galq 92 
                      +W k++       + en+++  ++ +          + e +r++++v m+ a+lve lld+++    + + ++ka++l+ + +       g lq
  XP_028097526.1 231 RLWIKDPidgrhiiQRENYEKIFSRTS---HlkssrTRFESSREEAIVRMNGAQLVEMLLDSSKrvdLFPTIITKATILQELGNRiprnlsGSLQ 322
                     578888888884445555555444443...345577899************************99*******************9********** PP

                     EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE CS
           START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd 131
                     l + +   lsplv  Rdf+f+Ry+ ++g+  w+iv+vS d
  XP_028097526.1 323 LVYEQVHILSPLVGpRDFYFLRYCAEMGKNEWMIVEVSYD 362
                     *************99***********************77 PP
3START48.62.3e-16375458119206
                     TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 119 gagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      ++ +   + S ++ ++pp  s++ R   lpSg+li+++ ng s++twvehv+++++++ h l+  ++ +gla ga +w+ tlqr c++
  XP_028097526.1 375 DQHHHQPHSSSATPSAPPP--SHSWR---LPSGCLIRDLNNGCSTITWVEHVEVDDKVVtHRLYTDFICRGLAYGADRWLLTLQRMCQR 458
                     5555555667778888887..47777...**********************************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MVEFMSSEEF ESSSSSRGRK RRYRHSPYQT QMLETFFEQC QHPNERQRCQ LGKEVGLTPL  60
QIKFWFQNKR TLVKTQNEKT EGHALRAENE RLKIENIAAR EMLKDEYCKA CKGISCTKED  120
HLHQLRLENC QLNDKYEYLC NLLATMGISV SKNPSLQRLP SIGSSSDGSE NFLGKRMRGL  180
SLGSSSNGSE NSVDHTLKSQ LKQVQDSDTL RMVQTVSNAI DELTSLFIMD RLWIKDPIDG  240
RHIIQRENYE KIFSRTSHLK SSRTRFESSR EEAIVRMNGA QLVEMLLDSS KRVDLFPTII  300
TKATILQELG NRIPRNLSGS LQLVYEQVHI LSPLVGPRDF YFLRYCAEMG KNEWMIVEVS  360
YDIFDKIESS TQQQDQHHHQ PHSSSATPSA PPPSHSWRLP SGCLIRDLNN GCSTITWVEH  420
VEVDDKVVTH RLYTDFICRG LAYGADRWLL TLQRMCQRFA FQFLPTPLPD PGNIKLNADG  480
CAKESLEKAS FGRNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.12e-87HD-ZIP family protein