PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028097608.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 912aa    MW: 100659 Da    PI: 6.4769
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028097608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_028097608.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_028097608.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp120.41.4e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv+WpnS+Wrs+k
  XP_028097608.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    
MRLSSSGFTQ QSPEGEQRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDA TFLPADLGTS  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LTKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVKWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPP NLPTFSGIKE EDLGMNSPLM WLRGDNGDRG IQSLNFQGIG  420
GVTPWMQPRL DTSMLGMQSD IYQAMAAAAA VQEMRAVDPS KQGLPYLMQF QRPQSVPGRS  480
AGVMQPQMLQ QSHPQPVFLQ SVKENQQQAQ AQAQAQAQAQ AHSHLLQQQL QHQLSFTNQH  540
QQQPLSQQQP QQLVDHQHVS TVVSTMSQFG SSSQTQSPSL QAISSMCQQQ SFSDSNGNPA  600
TNAVVSPLHS FMGSFSQDET SHLLSLPRSD ALLSSAGWPS KRVAVDPLLP SAASQCILPQ  660
VEQLGPPHTT TSQNAISLPP FPGRECSIDQ EGSNDPQNNL LFGVNIDSSS LIMQNGISSI  720
RGVGSDGDSM TMPFASSNYL STTGTDFSLN PVVTPSSCID ESGFLQSSEN VGQANPPTRT  780
FVKVHKSGSF GRSLDISKFS SYRELRSELA RMFGLEGQLE DPLRSGWQLV FVDRENDVLL  840
LGDDPWQEFV NSVWCIKILS PQEVHQMGKR GLELLNSVPT QRLSDSNCDD YASGQESRNL  900
SSGIASMGSL DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein