PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028097632.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 205aa    MW: 21974.8 Da    PI: 7.7313
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028097632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.5e-39151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+Cv+apyf +eq ++ fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+ael
  XP_028097632.1  15 PCGACKFLRRKCVKGCVFAPYFDSEQgSAYFAAVHKVFGASNASKMLLRIPANKRLDAAITLCYEALARIRDPVYGCVGHIFTLQQQVVNLQAEL 109
                     7***********************998899***************************************************************** PP

          DUF260  95 allkee 100
                     a+++++
  XP_028097632.1 110 AYIQAR 115
                     *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MSSNNGGGGG GGGGPCGACK FLRRKCVKGC VFAPYFDSEQ GSAYFAAVHK VFGASNASKM  60
LLRIPANKRL DAAITLCYEA LARIRDPVYG CVGHIFTLQQ QVVNLQAELA YIQARLSMLQ  120
FLPPPPPQPP GRPSTENLQS SSDFASNSNA STTNFDPSTS MELVSFCNPM DQEIEGGDDE  180
LQALAREFVS RYLPGGVKFR PSSSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-66LBD family protein