PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028098107.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family NF-YC
Protein Properties Length: 237aa    MW: 26650.4 Da    PI: 6.1802
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028098107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC34.93.3e-11133222999
           NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     + e+++d+  h +P+ ri +i+k+++   +is ea  l+ ka e f+  +   ++  a   +++ +    ++++v++   fdfl d vp++
  XP_028098107.1 133 KNESSSDV-SHCFPMNRISRIVKSEDPDIRISQEAVFLINKASEKFLEVFCKDAYACAFLDHKSQVWYKHLSSVVSKRRRFDFLADFVPEK 222
                     34555555.689***********96655679***************8888888999999999999***********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MAKGNQMADT SRKKGAKMED KVQIHSNNGK NNNTKKKKKT NTSNGTDNDN KDEPEVLVVS  60
DSSVDSKNND GDEVDEALQV QDTDEDEEED EEEDAKSSGI TNQRINKAKN GDEKEKNGAT  120
KKKKKSKYGK NKKNESSSDV SHCFPMNRIS RIVKSEDPDI RISQEAVFLI NKASEKFLEV  180
FCKDAYACAF LDHKSQVWYK HLSSVVSKRR RFDFLADFVP EKVKAEDTSA DVSIAET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121133KKKKKSKYGKNKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-26NF-YC family protein