PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028098108.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family NF-YC
Protein Properties Length: 227aa    MW: 25633.4 Da    PI: 7.4505
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028098108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC30.57.6e-10133218995
           NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                     + e+++d+  h +P+ ri +i+k+++   +is ea  l+ ka e f+  +   ++  a   +++ +    ++++v++   fdfl d 
  XP_028098108.1 133 KNESSSDV-SHCFPMNRISRIVKSEDPDIRISQEAVFLINKASEKFLEVFCKDAYACAFLDHKSQVWYKHLSSVVSKRRRFDFLADL 218
                     34555555.689***********96655679***************8888888999999999999********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAKGNQMADT SRKKGAKMED KVQIHSNNGK NNNTKKKKKT NTSNGTDNDN KDEPEVLVVS  60
DSSVDSKNND GDEVDEALQV QDTDEDEEED EEEDAKSSGI TNQRINKAKN GDEKEKNGAT  120
KKKKKSKYGK NKKNESSSDV SHCFPMNRIS RIVKSEDPDI RISQEAVFLI NKASEKFLEV  180
FCKDAYACAF LDHKSQVWYK HLSSVVSKRR RFDFLADLAC FITAYAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121133KKKKKSKYGKNKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-22NF-YC family protein