PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098446.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 495aa MW: 54385.1 Da PI: 7.1022

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.6e-17	152	201	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028098446.1 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201 78*****************......55**********************997 PP
2	AP2	41	4.9e-13	244	294	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g XP_028098446.1 244 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDQAAIKCNG 294 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MLDLNLSILD NEVLANVPES SEEESGTSNS SVVNAEASSS NAGDDDSCST RGDIFAFNFD 60 ILKVTAATTE SEVEGNENRM TRSEFVTRQL FPSIGGVGGL TQGLSSSSPS FLRPNWVDPS 120 LNQATSHGGL AEVRVVKQQV KKSRRGPRPR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG 180 GFDTAHAAAR AYDRAAIKFR GIEADINFNL SDYEDDLKQM TNMTKEEFVH ILRRQSTGFS 240 RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDNEVE AARAYDQAAI KCNGKEAVTN 300 FEPSTYDGEM ISEAYHEGGN HNLDLNLMIS APSSGDGPKD NGSLRHLQFH PYEVHGARRS 360 NMESPATTTL GNPTLKGQAM TSDHHPLWTG LHPNFFPNYE EKATRRGIEE GSSQGSPNWA 420 WQMHGGQGNT APTRVSTAAS SGFSSAATTT AAFSASVHPS KLLKPTALHL CFPSSATASS 480 NYQYYYQMRP LQPPP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MLDLNLSILD NEVLANVPES SEEESGTSNS SVVNAEASSS NAGDDDSCST RGDIFAFNFD  60
ILKVTAATTE SEVEGNENRM TRSEFVTRQL FPSIGGVGGL TQGLSSSSPS FLRPNWVDPS  120
LNQATSHGGL AEVRVVKQQV KKSRRGPRPR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GIEADINFNL SDYEDDLKQM TNMTKEEFVH ILRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDNEVE AARAYDQAAI KCNGKEAVTN  300
FEPSTYDGEM ISEAYHEGGN HNLDLNLMIS APSSGDGPKD NGSLRHLQFH PYEVHGARRS  360
NMESPATTTL GNPTLKGQAM TSDHHPLWTG LHPNFFPNYE EKATRRGIEE GSSQGSPNWA  420
WQMHGGQGNT APTRVSTAAS SGFSSAATTT AAFSASVHPS KLLKPTALHL CFPSSATASS  480
NYQYYYQMRP LQPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-107	AP2 family protein