PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028098726.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 210aa    MW: 23201.1 Da    PI: 7.8953
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028098726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.21.5e-72201746170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     sseq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++    ll+a  + +    ++llee +++++nl  n+++ +++ t +    
  XP_028098726.1  20 SSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMR--GPLLPAAXD-SFFSPQNLLEEIRSSSSNLLINQQNASESVTPI---- 107
                     79****************************************7665..566777664.233445599999999999887776655544444.... PP

           YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                           ee+p++p ++rPPekrqrvPsaynrfik+eiqrika+nP+ishreafsaaaknWahfP+ihfgl
  XP_028098726.1 108 ---RGLEELPKPPAANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPEISHREAFSAAAKNWAHFPHIHFGL 174
                     ...45789************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSSSSAFSP DHHHHLSPPS SEQLCYVHCN FCDTVLAVSV PCSSLFKTVT VRCGHCTNLL  60
SVNMRGPLLP AAXDSFFSPQ NLLEEIRSSS SNLLINQQNA SESVTPIRGL EELPKPPAAN  120
RPPEKRQRVP SAYNRFIKDE IQRIKAGNPE ISHREAFSAA AKNWAHFPHI HFGLLPDQPV  180
KKANMRQQDG EDVLMKDGFL APANMGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-80YABBY family protein